Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs139966744 | chr15:24389121 | A/G | 9.46E-8 | 496 | 37.42 | 33.7 | 3.3 | KM Plot |
KIRC | rs140011703 | chr3:48256462 | CA/C | 1.39E-5 | 495 | 37.75 | 37.47 | 21.12 | KM Plot |
KIRC | rs140055097 | chr2:67547832 | GA/G | 1.74E-7 | 507 | 37.35 | 37.73 | 2.03 | KM Plot |
KIRC | rs140070906 | chr21:47849205 | G/A | 4.61E-5 | 501 | 37.03 | 45.77 | 6.87 | KM Plot |
KIRC | rs1402595 | chr4:169168353 | C/T | 1.91E-8 | 509 | 37.37 | 37.67 | 3.1 | KM Plot |
KIRC | rs140369140 | chr2:67532179 | T/TA | 1.88E-7 | 505 | 37.18 | 37.73 | 2.03 | KM Plot |
KIRC | rs140394955 | chr15:24347808 | A/T | 2.47E-8 | 498 | 37.47 | 30.9 | 3.3 | KM Plot |
KIRC | rs140585189 | chr2:109343403 | G/A | 2.88E-12 | 506 | 37.77 | 26.3 | 2.3 | KM Plot |
KIRC | rs140655178 | chr15:24394117 | C/A | 2.56E-8 | 496 | 37.47 | 32.7 | 3.3 | KM Plot |
KIRC | rs140659791 | chr10:33007635 | C/A | 3.23E-5 | 507 | 37.37 | 37.63 | 17.32 | KM Plot |
KIRC | rs141010301 | chr4:169161210 | C/A | 2.16E-8 | 508 | 37.18 | 39.23 | 3.1 | KM Plot |
KIRC | rs141210907 | chr15:24453390 | T/C | 1.75E-8 | 501 | 37.47 | 33.7 | 3.3 | KM Plot |
KIRC | rs141243099 | chr2:67617951 | G/GA | 2.16E-7 | 504 | 37.33 | 37.77 | 2.03 | KM Plot |
KIRC | rs141320079 | chr2:109348768 | A/C | 3.04E-12 | 506 | 37.77 | 26.3 | 2.3 | KM Plot |
KIRC | rs141444256 | chr15:24423019 | C/T | 2.92E-8 | 496 | 37.5 | 31.7 | 3.3 | KM Plot |